Changelog

3.4.1 (2018-09-26)

  • Switched to CHARMM for initial setup
  • Fixed initialization method when restarting
  • Fixed some bugs related to merging CG universes
  • Added DC35 to nucleic acid selection

3.4.0 (2018-09-05)

  • Updated parameter file output
  • Changed coordinate analysis classes.
  • Fixed some bugs

3.3.5 (2018-07-09)

  • splittraj now writes Gromacs log files in each data subdirectory
  • table_convert properly assigns residue names
  • Changed RTF column length to 10

3.3.3 (2018-05-16)

  • Removed in_memory keyword argument

3.3.2 (2018-05-16)

  • Fixed bug for setting up unive

3.3.1 (2018-05-16)

  • Fixes bug in writing average coordinate file
  • Added log file command-line option

3.3.0 (2018-05-15)

  • Uses MDAnalysis 0.18.0
  • Fix Merge bug
  • Added logging features
  • Formatted according to PEP8

3.1.0 (2017-11-07)

  • Uses MDAnalysis 0.17.0-dev.
  • Fully compatabile with Python 3.
  • Added 6-site nucleic acid definition.
  • Added additional analysis tools.
  • Improved command-line interface.
  • Fixed numerous bugs from 3.0.

3.0.0 (2017-10-16)

  • First release on PyPI.
  • Uses MDAnalysis 0.16.2.
  • Modelled after MDAnalysis.
  • Allows for independent fluctuation matching
  • Can use later versions of CHARMM (>= c35)